petgraph/graph_impl/
serialization.rs

use serde::de::Error;

use std::marker::PhantomData;

use crate::prelude::*;

use crate::graph::Node;
use crate::graph::{Edge, IndexType};
use crate::serde_utils::CollectSeqWithLength;
use crate::serde_utils::MappedSequenceVisitor;
use crate::serde_utils::{FromDeserialized, IntoSerializable};
use crate::EdgeType;

use super::{EdgeIndex, NodeIndex};
use serde::{Deserialize, Deserializer, Serialize, Serializer};

/// Serialization representation for Graph
/// Keep in sync with deserialization and StableGraph
///
/// The serialization format is as follows, in Pseudorust:
///
/// Graph {
///     nodes: [N],
///     node_holes: [NodeIndex<Ix>],
///     edge_property: EdgeProperty,
///     edges: [Option<(NodeIndex<Ix>, NodeIndex<Ix>, E)>]
/// }
///
/// The same format is used by both Graph and StableGraph.
///
/// For graph there are restrictions:
/// node_holes is always empty and edges are always Some
///
/// A stable graph serialization that obeys these restrictions
/// (effectively, it has no interior vacancies) can de deserialized
/// as a graph.
///
/// Node indices are serialized as integers and are fixed size for
/// binary formats, so the Ix parameter matters there.
#[derive(Serialize)]
#[serde(rename = "Graph")]
#[serde(bound(serialize = "N: Serialize, E: Serialize, Ix: IndexType + Serialize"))]
pub struct SerGraph<'a, N: 'a, E: 'a, Ix: 'a + IndexType> {
    #[serde(serialize_with = "ser_graph_nodes")]
    nodes: &'a [Node<N, Ix>],
    node_holes: &'a [NodeIndex<Ix>],
    edge_property: EdgeProperty,
    #[serde(serialize_with = "ser_graph_edges")]
    edges: &'a [Edge<E, Ix>],
}

// Deserialization representation for Graph
// Keep in sync with serialization and StableGraph
#[derive(Deserialize)]
#[serde(rename = "Graph")]
#[serde(bound(
    deserialize = "N: Deserialize<'de>, E: Deserialize<'de>, Ix: IndexType + Deserialize<'de>"
))]
pub struct DeserGraph<N, E, Ix> {
    #[serde(deserialize_with = "deser_graph_nodes")]
    nodes: Vec<Node<N, Ix>>,
    #[serde(deserialize_with = "deser_graph_node_holes")]
    #[allow(unused)]
    #[serde(default = "Vec::new")]
    node_holes: Vec<NodeIndex<Ix>>,
    edge_property: EdgeProperty,
    #[serde(deserialize_with = "deser_graph_edges")]
    edges: Vec<Edge<E, Ix>>,
}

impl<Ix> Serialize for NodeIndex<Ix>
where
    Ix: IndexType + Serialize,
{
    fn serialize<S>(&self, serializer: S) -> Result<S::Ok, S::Error>
    where
        S: Serializer,
    {
        self.0.serialize(serializer)
    }
}

impl<'de, Ix> Deserialize<'de> for NodeIndex<Ix>
where
    Ix: IndexType + Deserialize<'de>,
{
    fn deserialize<D>(deserializer: D) -> Result<Self, D::Error>
    where
        D: Deserializer<'de>,
    {
        Ok(NodeIndex(Ix::deserialize(deserializer)?))
    }
}

impl<Ix> Serialize for EdgeIndex<Ix>
where
    Ix: IndexType + Serialize,
{
    fn serialize<S>(&self, serializer: S) -> Result<S::Ok, S::Error>
    where
        S: Serializer,
    {
        self.0.serialize(serializer)
    }
}

impl<'de, Ix> Deserialize<'de> for EdgeIndex<Ix>
where
    Ix: IndexType + Deserialize<'de>,
{
    fn deserialize<D>(deserializer: D) -> Result<Self, D::Error>
    where
        D: Deserializer<'de>,
    {
        Ok(EdgeIndex(Ix::deserialize(deserializer)?))
    }
}

#[derive(Serialize, Deserialize)]
#[serde(rename_all = "lowercase")]
#[derive(Debug)]
pub enum EdgeProperty {
    Undirected,
    Directed,
}

impl EdgeProperty {
    pub fn is_directed(&self) -> bool {
        match *self {
            EdgeProperty::Directed => true,
            EdgeProperty::Undirected => false,
        }
    }
}

impl<Ty> From<PhantomData<Ty>> for EdgeProperty
where
    Ty: EdgeType,
{
    fn from(_: PhantomData<Ty>) -> Self {
        if Ty::is_directed() {
            EdgeProperty::Directed
        } else {
            EdgeProperty::Undirected
        }
    }
}

impl<Ty> FromDeserialized for PhantomData<Ty>
where
    Ty: EdgeType,
{
    type Input = EdgeProperty;
    fn from_deserialized<E2>(input: Self::Input) -> Result<Self, E2>
    where
        E2: Error,
    {
        if input.is_directed() != Ty::is_directed() {
            Err(E2::custom(format_args!(
                "graph edge property mismatch, \
                 expected {:?}, found {:?}",
                EdgeProperty::from(PhantomData::<Ty>),
                input
            )))
        } else {
            Ok(PhantomData)
        }
    }
}

fn ser_graph_nodes<S, N, Ix>(nodes: &&[Node<N, Ix>], serializer: S) -> Result<S::Ok, S::Error>
where
    S: Serializer,
    N: Serialize,
    Ix: Serialize + IndexType,
{
    serializer.collect_seq_exact(nodes.iter().map(|node| &node.weight))
}

fn ser_graph_edges<S, E, Ix>(edges: &&[Edge<E, Ix>], serializer: S) -> Result<S::Ok, S::Error>
where
    S: Serializer,
    E: Serialize,
    Ix: Serialize + IndexType,
{
    serializer.collect_seq_exact(
        edges
            .iter()
            .map(|edge| Some((edge.source(), edge.target(), &edge.weight))),
    )
}

fn deser_graph_nodes<'de, D, N, Ix>(deserializer: D) -> Result<Vec<Node<N, Ix>>, D::Error>
where
    D: Deserializer<'de>,
    N: Deserialize<'de>,
    Ix: IndexType + Deserialize<'de>,
{
    deserializer.deserialize_seq(MappedSequenceVisitor::new(|n| {
        Ok(Node {
            weight: n,
            next: [EdgeIndex::end(); 2],
        })
    }))
}

fn deser_graph_node_holes<'de, D, Ix>(deserializer: D) -> Result<Vec<NodeIndex<Ix>>, D::Error>
where
    D: Deserializer<'de>,
    Ix: IndexType + Deserialize<'de>,
{
    deserializer.deserialize_seq(
        MappedSequenceVisitor::<NodeIndex<Ix>, NodeIndex<Ix>, _>::new(|_| {
            Err("Graph can not have holes in the node set, found non-empty node_holes")
        }),
    )
}

fn deser_graph_edges<'de, D, N, Ix>(deserializer: D) -> Result<Vec<Edge<N, Ix>>, D::Error>
where
    D: Deserializer<'de>,
    N: Deserialize<'de>,
    Ix: IndexType + Deserialize<'de>,
{
    deserializer.deserialize_seq(MappedSequenceVisitor::<
        Option<(NodeIndex<Ix>, NodeIndex<Ix>, N)>,
        _,
        _,
    >::new(|x| {
        if let Some((i, j, w)) = x {
            Ok(Edge {
                weight: w,
                node: [i, j],
                next: [EdgeIndex::end(); 2],
            })
        } else {
            Err("Graph can not have holes in the edge set, found None, expected edge")
        }
    }))
}

impl<'a, N, E, Ty, Ix> IntoSerializable for &'a Graph<N, E, Ty, Ix>
where
    Ix: IndexType,
    Ty: EdgeType,
{
    type Output = SerGraph<'a, N, E, Ix>;
    fn into_serializable(self) -> Self::Output {
        SerGraph {
            nodes: &self.nodes,
            node_holes: &[],
            edges: &self.edges,
            edge_property: EdgeProperty::from(PhantomData::<Ty>),
        }
    }
}

/// Requires crate feature `"serde-1"`
impl<N, E, Ty, Ix> Serialize for Graph<N, E, Ty, Ix>
where
    Ty: EdgeType,
    Ix: IndexType + Serialize,
    N: Serialize,
    E: Serialize,
{
    fn serialize<S>(&self, serializer: S) -> Result<S::Ok, S::Error>
    where
        S: Serializer,
    {
        self.into_serializable().serialize(serializer)
    }
}

pub fn invalid_node_err<E>(node_index: usize, len: usize) -> E
where
    E: Error,
{
    E::custom(format_args!(
        "invalid value: node index `{}` does not exist in graph \
         with node bound {}",
        node_index, len
    ))
}

pub fn invalid_hole_err<E>(node_index: usize) -> E
where
    E: Error,
{
    E::custom(format_args!(
        "invalid value: node hole `{}` is not allowed.",
        node_index
    ))
}

pub fn invalid_length_err<Ix, E>(node_or_edge: &str, len: usize) -> E
where
    E: Error,
    Ix: IndexType,
{
    E::custom(format_args!(
        "invalid size: graph {} count {} exceeds index type maximum {}",
        node_or_edge,
        len,
        <Ix as IndexType>::max().index()
    ))
}

impl<'a, N, E, Ty, Ix> FromDeserialized for Graph<N, E, Ty, Ix>
where
    Ix: IndexType,
    Ty: EdgeType,
{
    type Input = DeserGraph<N, E, Ix>;
    fn from_deserialized<E2>(input: Self::Input) -> Result<Self, E2>
    where
        E2: Error,
    {
        let ty = PhantomData::<Ty>::from_deserialized(input.edge_property)?;
        let nodes = input.nodes;
        let edges = input.edges;
        if nodes.len() >= <Ix as IndexType>::max().index() {
            Err(invalid_length_err::<Ix, _>("node", nodes.len()))?
        }

        if edges.len() >= <Ix as IndexType>::max().index() {
            Err(invalid_length_err::<Ix, _>("edge", edges.len()))?
        }

        let mut gr = Graph {
            nodes: nodes,
            edges: edges,
            ty: ty,
        };
        let nc = gr.node_count();
        gr.link_edges()
            .map_err(|i| invalid_node_err(i.index(), nc))?;
        Ok(gr)
    }
}

/// Requires crate feature `"serde-1"`
impl<'de, N, E, Ty, Ix> Deserialize<'de> for Graph<N, E, Ty, Ix>
where
    Ty: EdgeType,
    Ix: IndexType + Deserialize<'de>,
    N: Deserialize<'de>,
    E: Deserialize<'de>,
{
    fn deserialize<D>(deserializer: D) -> Result<Self, D::Error>
    where
        D: Deserializer<'de>,
    {
        Self::from_deserialized(DeserGraph::deserialize(deserializer)?)
    }
}
petgraph/graph_impl/serialization.rs

petgraph/graph_impl/
serialization.rs
